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Software

CHROnicle is a package dedicated to the reconstruction of the complete evolutionary history of genomes. It is based on the analysis of the marks accumulated over evolutionary time left in the genomes by chromosomal rearrangements.

A tool to find microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.

Set of tools and data sets that can be used to analyze the aggregation of a set of genes along the genome coordinate, at different scales of observation. It is based for the moment on the Escherichia coli genome. 

Parseq Infer transcription level from RNA-Seq read counts.

Accurate and flexible methods for DNA methylation analysis, based on hidden Markov models

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