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Publications

Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K.
Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface.
Nano Lett. 5(9), pp.1658-67 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L.
Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.
Biochemistry. 44(37), pp.12329-43 (2005).
Carbone A.
Pathways of deduction.
Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).
Carbone A, Pierce N (Eds.)
DNA Computing.
Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).
Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H.
seq++: analyzing biological sequences with a range of Markov-related models.
Bioinformatics. 21, pp.2783-2784 (2005).
Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.
RNA. 11(6), pp.928-38 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
The large-scale logico-chemical structure of a transcriptional regulation network.
eprint arXiv:q-bio/0502017. (2005).
Carbone A, Képès F, Zinovyev A.
Codon bias signatures, organization of microorganisms in codon space, and lifestyle.
Mol Biol Evol. 22(3), pp.547-61 (2005).
Carbone A.
SPAZIO DEI GENI, SPAZIO DEI GENOMI E DETERMINAZIONE DI UN GENOMA MINIMALE.
Annals of the Centro di Ricerca Matematica Ennio de Giorgi, Scuola Normale di Pisa. (2005).
Carbone A.
Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison.
Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005).
Wyers F, Rougemaille M, Badis G, Rousselle J-C, Dufour M-E, Boulay J, Régnault B, Devaux F, Namane A, Séraphin B, Libri D, Jacquier A.
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Cell. 121(5), pp.725-37 (2005).
Falciatore A, Bowler C.
The evolution and function of blue and red light photoreceptors.
Curr Top Dev Biol. 68, pp.317-50 (2005).
Zhang X, Kolaczkowska A, Devaux F, Panwar SLata, Hallstrom TC, Jacq C, W Moye-Rowley S.
Transcriptional regulation by Lge1p requires a function independent of its role in histone H2B ubiquitination.
J Biol Chem. 280(4), pp.2759-70 (2005).
Falciatore A, Merendino L, Barneche F, Ceol M, Meskauskiene R, Apel K, Rochaix J-D.
The FLP proteins act as regulators of chlorophyll synthesis in response to light and plastid signals in Chlamydomonas.
Genes Dev. 19(1), pp.176-87 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
Logic backbone of a transcription network.
Phys Rev Lett. 95(15), pp.158701 (2005).

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