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Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation. Nucleic Acids Res. 40(15), pp.7375-83 (2012).
. DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate. BMC Syst Biol. 5, pp.201 (2011).
. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Mol Biosyst. 7(3), pp.878-88 (2011).
. DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli. Mol Microbiol. 76(6), pp.1555-71 (2010).
. Chapter 2 Opening the DNA at the Promoter; The Energetic Challenge. in RNA Polymerases as Molecular Motors. The Royal Society of Chemistry. pp. 38-68 (2009)
DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate. Nucleic Acids Res. 37(16), pp.5390-404 (2009).
. Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions. Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).
. The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF. Mol Microbiol. 65(2), pp.425-40 (2007).
. Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage. Mol Microbiol. 63(1), pp.22-34 (2007).
. Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking. J Biol Chem. 282(36), pp.26067-76 (2007).
. Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter. Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).
. Bacteriophage T4Dam DNA-(adenine-N(6))-methyltransferase. Comparison of pre-steady state and single turnover methylation of 40-mer duplexes containing two (un)modified target sites. J Biol Chem. 279(48), pp.50012-8 (2004).
. Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA. Mol Microbiol. 52(4), pp.1013-28 (2004).
. Mycobacterium tuberculosis Rv1395 is a class III transcriptional regulator of the AraC family involved in cytochrome P450 regulation. J Biol Chem. 278(36), pp.33763-73 (2003).
. The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped. J Biomol Struct Dyn. 17 Suppl 1, pp.195-200 (2000).
. Kinetic analysis of enzyme-template interactions. Nucleotide incorporation by DNA-dependent RNA and DNA polymerases. in DNA-protein Interactions: A Practical Approach. Edited by: Buckle, M and Travers, A. eds. Oxford, UK. Oxford University Press. pp. 239-256 (2000)
Time-resolved synchrotron X-ray footprinting and its application to RNA folding. Methods Enzymol. 317, pp.353-68 (2000).
. Following the folding of RNA with time-resolved synchrotron X-ray footprinting. Methods Enzymol. 295, pp.379-402 (1998).
. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science. 279(5358), pp.1940-3 (1998).
. Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray 'footprinting'. Structure. 5(7), pp.865-9 (1997).
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Fractal-like patterns in DNA films, B form at 0% relative humidity, and antiheteronomous DNA: an IR study. Biopolymers. 34(8), pp.1105-13 (1994).
. Vibrational dynamics of wet-spun films of the NaDNA-netropsin complex: A Raman and infrared study. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 48(3), pp.2240-2245 (1993).
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