Bianca Sclavi

Zorman S, Seitz H, Sclavi B, Strick TR. Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation. Nucleic Acids Res. 40(15), pp.7375-83 (2012).

Grant MAA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M. DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate. BMC Syst Biol. 5, pp.201 (2011).

Scolari VF, Bassetti B, Sclavi B, Cosentino Lagomarsino M. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Mol Biosyst. 7(3), pp.878-88 (2011).

Olliver A, Saggioro C, Herrick J, Sclavi B. DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli. Mol Microbiol. 76(6), pp.1555-71 (2010).

Sclavi B Chapter 2 Opening the DNA at the Promoter; The Energetic Challenge. in RNA Polymerases as Molecular Motors. The Royal Society of Chemistry. pp. 38-68 (2009)

Rogozina A, Zaychikov E, Buckle M, Heumann H, Sclavi B. DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate. Nucleic Acids Res. 37(16), pp.5390-404 (2009).

Sclavi B. Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions. Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).

Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ. The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF. Mol Microbiol. 65(2), pp.425-40 (2007).

Herrick J, Sclavi B. Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage. Mol Microbiol. 63(1), pp.22-34 (2007).

Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M. Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking. J Biol Chem. 282(36), pp.26067-76 (2007).

Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H. Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter. Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).

Malygin EG, Sclavi B, Zinoviev VV, Evdokimov AA, Hattman S, Buckle M. Bacteriophage T4Dam DNA-(adenine-N(6))-methyltransferase. Comparison of pre-steady state and single turnover methylation of 40-mer duplexes containing two (un)modified target sites. J Biol Chem. 279(48), pp.50012-8 (2004).

Orsini G, Igonet S, Pène C, Sclavi B, Buckle M, Uzan M, Kolb A. Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA. Mol Microbiol. 52(4), pp.1013-28 (2004).

Recchi C, Sclavi B, Rauzier J, Gicquel B, Reyrat J-M. Mycobacterium tuberculosis Rv1395 is a class III transcriptional regulator of the AraC family involved in cytochrome P450 regulation. J Biol Chem. 278(36), pp.33763-73 (2003).

Ralston CY, Sclavi B, Brenowitz M, Sullivan M, Chance MR. The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped. J Biomol Struct Dyn. 17 Suppl 1, pp.195-200 (2000).

Sclavi B, Roux P Kinetic analysis of enzyme-template interactions. Nucleotide incorporation by DNA-dependent RNA and DNA polymerases. in DNA-protein Interactions: A Practical Approach. Edited by: Buckle, M and Travers, A. eds. Oxford, UK. Oxford University Press. pp. 239-256 (2000)

Ralston CY, Sclavi B, Sullivan M, Deras ML, Woodson SA, Chance MR, Brenowitz M. Time-resolved synchrotron X-ray footprinting and its application to RNA folding. Methods Enzymol. 317, pp.353-68 (2000).

Sclavi B, Woodson S, Sullivan M, Chance M, Brenowitz M. Following the folding of RNA with time-resolved synchrotron X-ray footprinting. Methods Enzymol. 295, pp.379-402 (1998).

Sclavi B, Sullivan M, Chance MR, Brenowitz M, Woodson SA. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science. 279(5358), pp.1940-3 (1998).

Chance MR, Sclavi B, Woodson SA, Brenowitz M. Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray 'footprinting'. Structure. 5(7), pp.865-9 (1997).

Sclavi B, Woodson S, Sullivan M, Chance MR, Brenowitz M. Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding. J Mol Biol. 266(1), pp.144-59 (1997).

Chance MR, Miller LM, Fischetti RF, Scheuring E, Huang WX, Sclavi B, Hai Y, Sullivan M. Global mapping of structural solutions provided by the extended X-ray absorption fine structure ab initio code FEFF 6.01: structure of the cryogenic photoproduct of the myoglobin-carbon monoxide complex. Biochemistry. 35(28), pp.9014-23 (1996).

Sclavi B, Peticolas WL, Powell JW. Fractal-like patterns in DNA films, B form at 0% relative humidity, and antiheteronomous DNA: an IR study. Biopolymers. 34(8), pp.1105-13 (1994).

Lee SA, Sclavi B, Powell JW, Williamson W, Rupprecht A. Vibrational dynamics of wet-spun films of the NaDNA-netropsin complex: A Raman and infrared study. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 48(3), pp.2240-2245 (1993).